2013 - 2014

  1. Regulatory analysis of the C. elegans genome with spatiotemporal resolution.
    Araya, C. L., Kawli, T., Kundaje, A., Jiang, L., Wu, B., Vafeados, D., Terrell, R., Weissdepp, P., Gevirtzman, L., Mace, D., Niu, W., Boyle, A. P., Xie, D., Ma, L., Murray, J. I., Reinke, V., Waterston, R. H. and Snyder, M. (2014). Nature 512(7515): 400-405. PubMed PMID: 25164749.

  2. H3K4me3 breadth is linked to cell identity and transcriptional consistency.
    Benayoun, B. A., Pollina, E. A., Ucar, D., Mahmoudi, S., Karra, K., Wong, E. D., Devarajan, K., Daugherty, A. C., Kundaje, A. B., Mancini, E., Hitz, B. C., Gupta, R., Rando, T. A., Baker, J. C., Snyder, M. P., Cherry, J. M. and Brunet, A. (2014). Cell 158(3): 673-688. PubMed PMID: 25083876

  3. Comparative analysis of regulatory information and circuits across distant species.
    Boyle, A. P., Araya, C. L., Brdlik, C., Cayting, P., Cheng, C., Cheng, Y., Gardner, K., Hillier, L. W., Janette, J., Jiang, L., Kasper, D., Kawli, T., Kheradpour, P., Kundaje, A., Li, J. J., Ma, L., Niu, W., Rehm, E. J., Rozowsky, J., Slattery, M., Spokony, R., Terrell, R., Vafeados, D., Wang, D., Weisdepp, P., Wu, Y. C., Xie, D., Yan, K. K., Feingold, E. A., Good, P. J., Pazin, M. J., Huang, H., Bickel, P. J., Brenner, S. E., Reinke, V., Waterston, R. H., Gerstein, M., White, K. P., Kellis, M. and Snyder, M. (2014). Nature 512(7515): 453-456. PubMed PMID: 25164757

  4. Principles of regulatory information conservation between mouse and human
    Cheng, Y., Ma, Z., Kim, B. H., Wu, W., Cayting, P., Boyle, A. P., Sundaram, V., Xing, X., Dogan, N., Li, J., Euskirchen, G., Lin, S., Lin, Y., Visel, A., Kawli, T., Yang, X., Patacsil, D., Keller, C. A., Giardine, B., Mouse, E. C., Kundaje, A., Wang, T., Pennacchio, L. A., Weng, Z., Hardison, R. C. and Snyder, M. P. (2014). Nature 515(7527): 371-375. PubMed PMID: 25409826

  5. PATH-SCAN: a reporting tool for identifying clinically actionable variants.
    Daneshjou, R., Zappala, Z., Kukurba, K., Boyle, S. M., Ormond, K. E., Klein, T. E., Snyder, M., Bustamante, C. D., Altman, R. B. and Montgomery, S. B. (2014). Pac Symp Biocomput: 229-240. PubMed PMID: 24297550

  6. Personalized sequencing and the future of medicine: discovery, diagnosis and defeat of disease
    Esplin, E. D., Oei, L. and Snyder, M. P. (2014).Pharmacogenomics 15(14): 1771-1790. PubMed PMID: 25493570

  7. Genomic era diagnosis and management of hereditary and sporadic colon cancer.
    Esplin, E. D. and Snyder, M. P. (2014). World J Clin Oncol 5(5): 1036-1047. PubMed PMID: 25493239; PubMed Central PMCID: PMC4259930.

  8. Exome sequencing and genome-wide copy number variant mapping reveal novel associations with sensorineural hereditary hearing loss.
    Haraksingh, R. R., Jahanbani, F., Rodriguez-Paris, J., Gelernter, J., Nadeau, K. C., Oghalai, J. S., Schrijver, I. and Snyder, M. P. (2014). " BMC Genomics 15: 1155. PubMed PMID: 25528277; PubMed Central PMCID: PMC4367882.

  9. Genome-wide map of regulatory interactions in the human genome
    Heidari, N., Phanstiel, D. H., He, C., Grubert, F., Jahanbani, F., Kasowski, M., Zhang, M. Q. and Snyder, M. P. (2014). Genome Res 24(12): 1905-1917. PubMed PMID: 25228660; PubMed Central PMCID: PMC4248309.

  10. Identification of STAT5A and STAT5B target genes in human T cells.
    Kanai, T., Seki, S., Jenks, J. A., Kohli, A., Kawli, T., Martin, D. P., Snyder, M., Bacchetta, R. and Nadeau, K. C. (2014). " PLoS One 9(1): e86790. PubMed PMID: 24497979; PubMed Central PMCID: PMC3907443.

  11. STORMSeq: an open-source, user-friendly pipeline for processing personal genomics data in the cloud.
    Karczewski, K. J., Fernald, G. H., Martin, A. R., Snyder, M., Tatonetti, N. P. and Dudley, J. T. (2014). PLoS One 9(1): e84860. PubMed PMID: 24454756; PubMed Central PMCID: PMC3893165.
  12. Karczewski, K. J., Snyder, M., Altman, R. B. and Tatonetti, N. P. (2014). "Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association." PLoS Genet 10(2): e1004122. PubMed PMID: 24516403; PubMed Central PMCID: PMC3916285.

  13. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease
    Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R., Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J., Weng, Z., White, K. P. and Hardison, R. C. (2014). Proc Natl Acad Sci U S A 111(33): E3366. PubMed PMID: 25275169; PubMed Central PMCID: PMC4143047.

  14. Global analysis of transcription factor-binding sites in yeast using ChIP-Seq.
    Lefrancois, P., Gallagher, J. E. and Snyder, M. (2014). Methods Mol Biol 1205: 231-255. PubMed PMID: 25213249.

  15. Integrated systems analysis reveals a molecular network underlying autism spectrum disorders.
    Li, J., Shi, M., Ma, Z., Zhao, S., Euskirchen, G., Ziskin, J., Urban, A., Hallmayer, J. and Snyder, M. (2014). Mol Syst Biol 10: 774. PubMed PMID: 25549968; PubMed Central PMCID: PMC4300495.

  16. Comparison of the transcriptional landscapes between human and mouse tissues.
    Lin, S., Lin, Y., Nery, J. R., Urich, M. A., Breschi, A., Davis, C. A., Dobin, A., Zaleski, C., Beer, M. A., Chapman, W. C., Gingeras, T. R., Ecker, J. R. and Snyder, M. P. (2014).Proc Natl Acad Sci U S A 111(48): 17224-17229. PubMed PMID: 25413365; PubMed Central PMCID: PMC4260565.

  17. Transcriptome sequencing from diverse human populations reveals differentiated regulatory architecture.
    Martin, A. R., Costa, H. A., Lappalainen, T., Henn, B. M., Kidd, J. M., Yee, M. C., Grubert, F., Cann, H. M., Snyder, M., Montgomery, S. B. and Bustamante, C. D. (2014).PLoS Genet 10(8): e1004549. PubMed PMID: 25121757; PubMed Central PMCID: PMC4133153.

  18. Topologically associating domains are stable units of replication-timing regulation.
    Pope, B. D., Ryba, T., Dileep, V., Yue, F., Wu, W., Denas, O., Vera, D. L., Wang, Y., Hansen, R. S., Canfield, T. K., Thurman, R. E., Cheng, Y., Gulsoy, G., Dennis, J. H., Snyder, M. P., Stamatoyannopoulos, J. A., Taylor, J., Hardison, R. C., Kahveci, T., Ren, B. and Gilbert, D. M. (2014). Nature 515(7527): 402-405. PubMed PMID: 25409831; PubMed Central PMCID: PMC4251741.

  19. Shared functions of plant and mammalian StAR-related lipid transfer (START) domains in modulating transcription factor activity.
    Schrick, K., Bruno, M., Khosla, A., Cox, P. N., Marlatt, S. A., Roque, R. A., Nguyen, H. C., He, C., Snyder, M. P., Singh, D. and Yadav, G. (2014). BMC Biol 12: 70. PubMed PMID: 25159688; PubMed Central PMCID: PMC4169639.

  20. Serum profiling using protein microarrays to identify disease related antigens.
    Sharon, D. and Snyder, M. (2014). Methods Mol Biol 1176: 169-178. PubMed PMID: 25030927; PubMed Central PMCID: PMC4420618.

  21. iPOP and its role in participatory medicine.
    Snyder, M.
    (2014). Genome Med 6(1): 6. PubMed PMID: 24479626; PubMed Central PMCID: PMC3978943.

  22. Ready or not: personalized medicine is coming. IEEE Pulse talks with Michael Snyder about its potential.
    Snyder, M.
    and Mertz, L. (2014). IEEE Pulse 5(3): 45-47. PubMed PMID: 24838211.

  23. Snyder, M., Mias, G., Stanberry, L. and Kolker, E. (2014). "Metadata checklist for the integrated personal OMICS study: proteomics and metabolomics experiments." OMICS 18(1): 81-85. PubMed PMID: 24456466; PubMed Central PMCID: PMC3903326.

  24. Widespread contribution of transposable elements to the innovation of gene regulatory networks.
    Sundaram, V., Cheng, Y., Ma, Z., Li, D., Xing, X., Edge, P., Snyder, M. P. and Wang, T. (2014). Genome Res 24(12): 1963-1976. PubMed PMID: 25319995; PubMed Central PMCID: PMC4248313.

  25. Strain Kaplan of Pseudorabies Virus Genome Sequenced by PacBio Single-Molecule Real-Time Sequencing Technology
    Tombacz, D., Sharon, D., Olah, P., Csabai, Z., Snyder, M. and Boldogkoi, Z. (2014). Genome Announc 2(4). PubMed PMID: 25035325; PubMed Central PMCID: PMC4102862.

  26. Landscape and variation of RNA secondary structure across the human transcriptome.
    Wan, Y., Qu, K., Zhang, Q. C., Flynn, R. A., Manor, O., Ouyang, Z., Zhang, J., Spitale, R. C., Snyder, M. P., Segal, E. and Chang, H. Y. (2014). Nature 505(7485): 706-709. PubMed PMID: 24476892; PubMed Central PMCID: PMC3973747.

  27. A comparative encyclopedia of DNA elements in the mouse genome.
    Yue, F., Cheng, Y., Breschi, A., Vierstra, J., Wu, W., Ryba, T., Sandstrom, R., Ma, Z., Davis, C., Pope, B. D., Shen, Y., Pervouchine, D. D., Djebali, S., Thurman, R. E., Kaul, R., Rynes, E., Kirilusha, A., Marinov, G. K., Williams, B. A., Trout, D., Amrhein, H., Fisher-Aylor, K., Antoshechkin, I., DeSalvo, G., See, L. H., Fastuca, M., Drenkow, J., Zaleski, C., Dobin, A., Prieto, P., Lagarde, J., Bussotti, G., Tanzer, A., Denas, O., Li, K., Bender, M. A., Zhang, M., Byron, R., Groudine, M. T., McCleary, D., Pham, L., Ye, Z., Kuan, S., Edsall, L., Wu, Y. C., Rasmussen, M. D., Bansal, M. S., Kellis, M., Keller, C. A., Morrissey, C. S., Mishra, T., Jain, D., Dogan, N., Harris, R. S., Cayting, P., Kawli, T., Boyle, A. P., Euskirchen, G., Kundaje, A., Lin, S., Lin, Y., Jansen, C., Malladi, V. S., Cline, M. S., Erickson, D. T., Kirkup, V. M., Learned, K., Sloan, C. A., Rosenbloom, K. R., Lacerda de Sousa, B., Beal, K., Pignatelli, M., Flicek, P., Lian, J., Kahveci, T., Lee, D., Kent, W. J., Ramalho Santos, M., Herrero, J., Notredame, C., Johnson, A., Vong, S., Lee, K., Bates, D., Neri, F., Diegel, M., Canfield, T., Sabo, P. J., Wilken, M. S., Reh, T. A., Giste, E., Shafer, A., Kutyavin, T., Haugen, E., Dunn, D., Reynolds, A. P., Neph, S., Humbert, R., Hansen, R. S., De Bruijn, M., Selleri, L., Rudensky, A., Josefowicz, S., Samstein, R., Eichler, E. E., Orkin, S. H., Levasseur, D., Papayannopoulou, T., Chang, K. H., Skoultchi, A., Gosh, S., Disteche, C., Treuting, P., Wang, Y., Weiss, M. J., Blobel, G. A., Cao, X., Zhong, S., Wang, T., Good, P. J., Lowdon, R. F., Adams, L. B., Zhou, X. Q., Pazin, M. J., Feingold, E. A., Wold, B., Taylor, J., Mortazavi, A., Weissman, S. M., Stamatoyannopoulos, J. A., Snyder, M. P., Guigo, R., Gingeras, T. R., Gilbert, D. M., Hardison, R. C., Beer, M. A., Ren, B. and Mouse, E. C. (2014).Nature 515(7527): 355-364. PubMed PMID: 25409824; PubMed Central PMCID: PMC4266106.

  28. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
    Brdlik, C. M., Niu, W. and Snyder, M. (2014). Methods Enzymol 539: 89-111. PubMed PMID: 24581441.

  29. Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
    Buenrostro, J. D., Araya, C. L., Chircus, L. M., Layton, C. J., Chang, H. Y., Snyder, M. P. and Greenleaf, W. J. (2014).Nat Biotechnol 32(6): 562-568. PubMed PMID: 24727714.

  30. Extended lifespan and reduced adiposity in mice lacking the FAT10 gene.
    Canaan, A., DeFuria, J., Perelman, E., Schultz, V., Seay, M., Tuck, D., Flavell, R. A., Snyder, M. P., Obin, M. S. and Weissman, S. M. (2014). Proc Natl Acad Sci U S A 111(14): 5313-5318. PubMed PMID: 24706839; PubMed Central PMCID: PMC3986194.

  31. Clinical interpretation and implications of whole-genome sequencing.
    Dewey, F. E., Grove, M. E., Pan, C., Goldstein, B. A., Bernstein, J. A., Chaib, H., Merker, J. D., Goldfeder, R. L., Enns, G. M., David, S. P., Pakdaman, N., Ormond, K. E., Caleshu, C., Kingham, K., Klein, T. E., Whirl-Carrillo, M., Sakamoto, K., Wheeler, M. T., Butte, A. J., Ford, J. M., Boxer, L., Ioannidis, J. P., Yeung, A. C., Altman, R. B., Assimes, T. L., Snyder, M., Ashley, E. A. and Quertermous, T. (2014). JAMA 311(10): 1035-1045. PubMed PMID: 24618965.

  32. Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway.
    Enns, G. M., Shashi, V., Bainbridge, M., Gambello, M. J., Zahir, F. R., Bast, T., Crimian, R., Schoch, K., Platt, J., Cox, R., Bernstein, J. A., Scavina, M., Walter, R. S., Bibb, A., Jones, M., Hegde, M., Graham, B. H., Need, A. C., Oviedo, A., Schaaf, C. P., Boyle, S., Butte, A. J., Chen, R., Clark, M. J., Haraksingh, R., Cowan, T. M., He, P., Langlois, S., Zoghbi, H. Y., Snyder, M., Gibbs, R. A., Freeze, H. H. and Goldstein, D. B. (2014). Genet Med. PubMed PMID: 24651605.

  33. Divergence in a master variator generates distinct phenotypes and transcriptional responses.
    Gallagher, J. E., Zheng, W., Rong, X., Miranda, N., Lin, Z., Dunn, B., Zhao, H. and Snyder, M. P. (2014).Genes Dev 28(4): 409-421. PubMed PMID: 24532717; PubMed Central PMCID: PMC3937518.

  34. Haplotype structure and positive selection at TLR1.
    Heffelfinger, C., Pakstis, A. J., Speed, W. C., Clark, A. P., Haigh, E., Fang, R., Furtado, M. R., Kidd, K. K. and Snyder, M. P. (2014). Eur J Hum Genet 22(4): 551-557. PubMed PMID: 24002163; PubMed Central PMCID: PMC3953919.

  35. Defining functional DNA elements in the human genome.
    Kellis, M., Wold, B., Snyder, M. P., Bernstein, B. E., Kundaje, A., Marinov, G. K., Ward, L. D., Birney, E., Crawford, G. E., Dekker, J., Dunham, I., Elnitski, L. L., Farnham, P. J., Feingold, E. A., Gerstein, M., Giddings, M. C., Gilbert, D. M., Gingeras, T. R., Green, E. D., Guigo, R., Hubbard, T., Kent, J., Lieb, J. D., Myers, R. M., Pazin, M. J., Ren, B., Stamatoyannopoulos, J. A., Weng, Z., White, K. P. and Hardison, R. C. (2014).Proc Natl Acad Sci U S A 111(17): 6131-6138. PubMed PMID: 24753594; PubMed Central PMCID: PMC4035993.

  36. Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.
    Kolker, E., Ozdemir, V., Martens, L., Hancock, W., Anderson, G., Anderson, N., Aynacioglu, S., Baranova, A., Campagna, S. R., Chen, R., Choiniere, J., Dearth, S. P., Feng, W. C., Ferguson, L., Fox, G., Frishman, D., Grossman, R., Heath, A., Higdon, R., Hutz, M. H., Janko, I., Jiang, L., Joshi, S., Kel, A., Kemnitz, J. W., Kohane, I. S., Kolker, N., Lancet, D., Lee, E., Li, W., Lisitsa, A., Llerena, A., Macnealy-Koch, C., Marshall, J. C., Masuzzo, P., May, A., Mias, G., Monroe, M., Montague, E., Mooney, S., Nesvizhskii, A., Noronha, S., Omenn, G., Rajasimha, H., Ramamoorthy, P., Sheehan, J., Smarr, L., Smith, C. V., Smith, T., Snyder, M., Rapole, S., Srivastava, S., Stanberry, L., Stewart, E., Toppo, S., Uetz, P., Verheggen, K., Voy, B. H., Warnich, L., Wilhelm, S. W. and Yandl, G. (2014).OMICS 18(1): 10-14. PubMed PMID: 24456465; PubMed Central PMCID: PMC3903324.

  37. Allelic expression of deleterious protein-coding variants across human tissues.
    Kukurba, K. R., Zhang, R., Li, X., Smith, K. S., Knowles, D. A., How Tan, M., Piskol, R., Lek, M., Snyder, M., Macarthur, D. G., Li, J. B. and Montgomery, S. B. (2014). PLoS Genet 10(5): e1004304. PubMed PMID: 24786518; PubMed Central PMCID: PMC4006732.

  38. Whole-genome haplotyping using long reads and statistical methods.
    Kuleshov, V., Xie, D., Chen, R., Pushkarev, D., Ma, Z., Blauwkamp, T., Kertesz, M. and Snyder, M. (2014). Nat Biotechnol 32(3): 261-266. PubMed PMID: 24561555; PubMed Central PMCID: PMC4073643.

  39. Distinct splice variants and pathway enrichment in the cell-line models of aggressive human breast cancer subtypes.
    Menon, R., Im, H., Zhang, E. Y., Wu, S. L., Chen, R., Snyder, M., Hancock, W. S. and Omenn, G. S. (2014). J Proteome Res 13(1): 212-227. PubMed PMID: 24111759; PubMed Central PMCID: PMC3943430.

  40. Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.
    Phanstiel, D. H., Boyle, A. P., Araya, C. L. and Snyder, M. P. (2014).Bioinformatics. PubMed PMID: 24903420.

  41. Defining a personal, allele-specific, and single-molecule long-read transcriptome.
    Tilgner, H., Grubert, F., Sharon, D. and Snyder, M. P. (2014). Proc Natl Acad Sci U S A. PubMed PMID: 24961374.

  42. Path-scan: a reporting tool for identifying clinically actionable variants.
    Daneshjou, R., Z. Zappala, K. Kukurba, S. M. Boyle, K. E. Ormond, T. E. Klein, M. Snyder, C. D. Bustamante, R. B. Altman and S. B. Montgomery (2014). Pac Symp Biocomput: 229-240. PubMed PubMed PMID: 24297550; PubMed Central PMCID: PMC4008882.

  43. STAT3 targets suggest mechanisms of aggressive tumorigenesis in diffuse large B-cell lymphoma.
    Hardee, J., Z. Ouyang, Y. Zhang, A. Kundaje, P. Lacroute and M. Snyder (2013). G3 (Bethesda) 3(12): 2173-2185. PubMed PMID: 24142927; PubMed Central PMCID: PMC3852380.

  44. Identification of STAT5A and STAT5B Target Genes in Human T Cells.
    Kanai, T., S. Seki, J. A. Jenks, A. Kohli, T. Kawli, D. P. Martin, M. Snyder, R. Bacchetta and K. C. Nadeau (2014).PLoS One 9(1): e86790. PubMed PMID: 24497979; PubMed Central PMCID: PMC3907443.

  45. Systematic functional regulatory assessment of disease-associated variants.
    Karczewski, K. J., J. T. Dudley, K. R. Kukurba, R. Chen, A. J. Butte, S. B. Montgomery and M. Snyder (2013). Proc Natl Acad Sci U S A 110(23): 9607-9612. PubMed PMID: 23690573; PubMed Central PMCID: PMC3677437.

  46. STORMSeq: An Open-Source, User-Friendly Pipeline for Processing Personal Genomics Data in the Cloud.
    Karczewski, K. J., G. H. Fernald, A. R. Martin, M. Snyder, N. P. Tatonetti and J. T. Dudley (2014). PLoS One 9(1): e84860. PubMed PMID: 24454756; PubMed Central PMCID: PMC3893165.

  47. Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association.
    Karczewski, K. J., M. Snyder, R. B. Altman and N. P. Tatonetti (2014). PLoS Genet 10(2): e1004122. PubMed PMID: 24516403; PubMed Central PMCID: PMC3916285.

  48. Specific plasma autoantibody reactivity in myelodysplastic syndromes
    Mias, G. I., R. Chen, Y. Zhang, K. Sridhar, D. Sharon, L. Xiao, H. Im, M. P. Snyder and P. L. Greenberg (2013).Sci Rep 3: 3311. PubMed PMID: 24264604; PubMed Central PMCID: PMC3837310.

  49. iPOP and its role in participatory medicine.
    Snyder, M
    . (2014). Genome Med 6(1): 6. PubMed PMID: 24479626.

  50. Metadata Checklist for the Integrated Personal OMICS Study: Proteomics and Metabolomics Experiments.
    Snyder, M.
    , G. Mias, L. Stanberry and E. Kolker (2014). OMICS 18(1): 81-85. PubMed PMID: 24456466; PubMed Central PMCID: PMC3903326.

  51. Landscape and variation of RNA secondary structure across the human transcriptome.
    Wan, Y., K. Qu, Q. C. Zhang, R. A. Flynn, O. Manor, Z. Ouyang, J. Zhang, R. C. Spitale, M. P. Snyder, E. Segal and H. Y. Chang (2014). Nature 505(7485): 706-709. PubMed PMID: 24476892.

  52. Dynamic trans-acting factor colocalization in human cells.
    Xie, D., A. P. Boyle, L. Wu, J. Zhai, T. Kawli and M. Snyder (2013). Cell 155(3): 713-724. PubMed PMID: 24243024.

  53. Extensive variation in chromatin states across humans.
    Kasowski M, Kyriazopoulou-Panagiotopoulou S, Grubert F, Zaugg JB, Kundaje A,Liu Y, Boyle AP, Zhang QC, Zakharia F, Spacek DV, Li J, Xie D, Olarerin-George A,Steinmetz LM, Hogenesch JB, Kellis M, Batzoglou S, Snyder M.Science. 2013 Nov 8;342(6159):750-2. doi:10.1126/science.1242510. Epub 2013 Oct 17. PubMed PMID: 24136358.

  54. A single-molecule long-read survey of the human transcriptome.
    Sharon D, Tilgner H, Grubert F, Snyder M. Nat Biotechnol. 2013 Nov;31(11):1009-14. doi:10.1038/nbt.2705. Epub 2013 Oct 13. PubMed PMID: 24108091.

  55. Whole-exome sequencing identifiestetratricopeptide repeat domain 7A (TTC7A) mutations for combinedimmunodeficiency with intestinal atresias.
    Chen R, Giliani S, Lanzi G, Mias GI, Lonardi S, Dobbs K, Manis J, Im H,Gallagher JE, Phanstiel DH, Euskirchen G, Lacroute P, Bettinger K, Moratto D,Weinacht K, Montin D, Gallo E, Mangili G, Porta F, Notarangelo LD, Pedretti S,Al-Herz W, Alfahdli W, Comeau AM, Traister RS, Pai SY, Carella G, Facchetti F,Nadeau KC, Snyder M, Notarangelo LD. J Allergy Clin Immunol. 2013Sep;132(3):656-664.e17. doi: 10.1016/j.jaci.2013.06.013. Epub 2013 Jul 4. PubMed PMID: 23830146; PubMed Central PMCID: PMC3759618.

  56. Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females.
    Poznik GD, Henn BM, Yee MC, Sliwerska E, Euskirchen GM, Lin AA, Snyder M,Quintana-Murci L, Kidd JM, Underhill PA, Bustamante CD. Science.2013 Aug 2;341(6145):562-5. doi: 10.1126/science.1237619. PubMed PMID: 23908239.

  57. Personal Genomes, Quantitative Dynamic Omics and Personalized Medicine
    Mias GI, Snyder M, Quantitative Biology 1(1) p71-90 (2013)

  58. iPOP Goes the World: Integrated Personalized OmicsProfiling and the Road toward Improved Health Care.
    Li-Pook-Than J, Snyder M.Chem Biol. 2013 May23;20(5):660-6. doi: 10.1016/j.chembiol.2013.05.001. PubMed PMID: 23706632.

  59. Systematic functional regulatory assessment of disease-associated variants.
    Karczewski KJ, Dudley JT, Kukurba KR, Chen R, Butte AJ, Montgomery SB, Snyder M.Proc Natl Acad Sci U S A. 2013 May 20. [Epub ahead of print] PubMed PMID:23690573.

  60. Variation and genetic control of protein abundance in humans.
    Wu L, Candille SI, Choi Y, Xie D, Jiang L, Li-Pook-Than J, Tang H, Snyder M. Nature. 2013 Jul4;499(7456):79-82. doi: 10.1038/nature12223. Epub 2013 May 15. PubMed PMID:23676674; PubMed Central PMCID: PMC3789121.

  61. High-throughput sequencing for biology andmedicine.
    Soon WW, Hariharan M, Snyder MP. Mol Syst Biol. 2013;9:640. doi: 10.1038/msb.2012.61. PubMed PMID:23340846; PubMed Central PMCID: PMC3564260.

  62. Promise of personalized omics to precision medicine.
    Chen R, Snyder M. Wiley Interdiscip Rev Syst Biol Med. 2013 Jan-Feb;5(1):73-82. doi: 10.1002/wsbm.1198.Epub 2012 Nov 26. PubMed PMID: 23184638.